Publications

2021

  • Engels, G., & Grosjean, P. (08 July 2021). "Teaching Biology students to code smoothly with learnR and gradethis". Poster session presented at UseR!2021, Zurich, Switzerland.

2020

  • Grosjean, P. (2020). "BioDataScience2: A Series of Learnr Documents for Biological Data Science course 2: An R package for e-learning package for teaching biological data science".
  • Grosjean, P. (2020). "BioDataScience2: A Series of Learnr Documents for Biological Data Science course 2: An R package for e-learning package for teaching biological data science".
  • Grosjean, P. (2020). "Learndown: Use R markdown and bookdown for e-learning with h5p & Shiny/learnr apps: An R package for e-learning".
  • Grosjean, P. (2020). "Learndown: Use R markdown and bookdown for e-learning with h5p & Shiny/learnr apps: An R package for e-learning".
  • Grosjean, P., & Engels, G. (2020). "BioDataScience - Initialize R environment for BioDataScience courses: An R package for teaching biological data science".
  • Grosjean, P., & Engels, G. (2020). "BioDataScience - Initialize R environment for BioDataScience courses: An R package for teaching biological data science".
  • Grosjean, P., & Engels, G. (2020). "BioDataScience3: A Series of Learnr Documents for Biological Data Science course 3: An R package for e-learning package for teaching biological data science".
  • Grosjean, P., & Engels, G. (2020). "BioDataScience3: A Series of Learnr Documents for Biological Data Science course 3: An R package for e-learning package for teaching biological data science".
  • Grosjean, P., Engels, G., & Conotte, R. (2020). "BioDataScience1: A Series of Learnr Documents for Biological Data Science course 1: An R package for teaching biological data science".
  • Grosjean, P., Engels, G., & Conotte, R. (2020). "BioDataScience1: A Series of Learnr Documents for Biological Data Science course 1: An R package for teaching biological data science".
  • Fullgrabe, L., Grosjean, P., Gobert, S., Lejeune, P., Leduc, M., Engels, G., Dauby, P., Boissery, P., & Richir, J. (23 July 2020). Zooplankton dynamics in a changing environment: A 13-year survey in the northwestern Mediterranean Sea. "Marine Environmental Research, 159".
  • Fullgrabe, L., Grosjean, P., Gobert, S., Lejeune, P., Leduc, M., Engels, G., Dauby, P., Boissery, P., & Richir, J. (23 July 2020). Zooplankton dynamics in a changing environment: A 13-year survey in the northwestern Mediterranean Sea. "Marine Environmental Research, 159".
  • Richir, J., Champenois, W., Engels, G., Abadie, A., Gobert, S., Lepoint, G., Santos, R. O., Silva, J., Sirjacobs, D., & Borges, A. V. (2020). A 15-month survey of dimethylsulfoniopropionate and dimethylsulfoxide content in Posidonia oceanica. "Frontiers in Ecology and Evolution". doi:10.3389/fevo.2019.00510

2019

  • Engels, G., & Grosjean, P. (03 March 2019). "Amélioration de l'apprentissage via l'analyse des résultats de quiz interactifs". Poster session presented at 3ème Journée des Enseignants de l'UMONS, Mons, Belgium.
  • Engels, G., & Grosjean, P. (05 March 2019). "Classe inversée et outils interactifs : les clés de la motivation des étudiants en apprentissage de la science des données". Poster session presented at 3ème Journée des Enseignants de l'UMONS, Mons, Belgium.
  • Engels, G., & Grosjean, P. (09 July 2019). "Better learning of data science in a biology curriculum by using R, Studio, learnr & Github Classroom". Poster session presented at useR, Toulouse, France.
  • Engels, G., & Grosjean, P. (09 July 2019). "Better learning of data science in a biology curriculum by using R, Studio, learnr & Github Classroom". Poster session presented at useR, Toulouse, France.
  • Engels, G., Georges, N., Conotte, R., Batigny, A., & Grosjean, P. (05 March 2019). "Réponses écophysiologiques de Seriatopora hystrix (Dana, 1846) lors de stress hypo- et hypersalin". Poster session presented at Mardi des Chercheurs, Mons, Belgium.
  • Engels, G., Georges, N., Conotte, R., Batigny, A., & Grosjean, P. (05 March 2019). "Réponses écophysiologiques de Seriatopora hystrix (Dana, 1846) lors de stress hypo- et hypersalin". Poster session presented at Mardi des Chercheurs, Mons, Belgium.
  • Decan, A., Mens, T., & Grosjean, P. (01 February 2019). An empirical comparison of dependency network evolution in seven software packaging ecosystems. "Empirical Software Engineering, 24" (1), 381-416. doi:10.1007/s10664-017-9589-y
  • Decan, A., Mens, T., & Grosjean, P. (01 February 2019). An empirical comparison of dependency network evolution in seven software packaging ecosystems. "Empirical Software Engineering, 24" (1), 381-416. doi:10.1007/s10664-017-9589-y
  • Rouabhi, Y. L., Grosjean, P., Zitouni, B., Hacene, O. R., & Richir, J. (07 June 2019). Reproductive cycle and follicle cleaning process of Mytilus galloprovincialis (Mollusca: Bivalvia) from a polluted coastal site in Algeria. "Invertebrate Reproduction and Development, 63" (4), 255-267. doi:10.1080/07924259.2019.1631221
  • Rouabhi, Y. L., Grosjean, P., Zitouni, B., Hacene, O. R., & Richir, J. (07 June 2019). Reproductive cycle and follicle cleaning process of Mytilus galloprovincialis (Mollusca: Bivalvia) from a polluted coastal site in Algeria. "Invertebrate Reproduction and Development, 63" (4), 255-267. doi:10.1080/07924259.2019.1631221

2018

  • Engels, G., & Grosjean, P. (04 July 2018). "Introduction de nouveaux outils (learn, GitHub Classroom,...) dans les cours de Science des données en biologie". Poster session presented at Septièmes rencontres R, Rennes, France.
  • Engels, G., & Grosjean, P. (04 July 2018). "Introduction de nouveaux outils (learn, GitHub Classroom,...) dans les cours de Science des données en biologie". Poster session presented at Septièmes rencontres R, Rennes, France.
  • Engels, G., Georges, N., Conotte, R., Batigny, A., & Grosjean, P. (14 December 2018). "Ecophysiological responses of Seriatopora hystrix (Dana, 1846) to short-term hypo- and hypersaline stress". Poster session presented at The 25th Benelux congress of Zoology, 'Zoology in the Anthropocene', Anvers, Belgium.
  • Wacquet, G., Lefebvre, A., Blondel, C., Louchart, A., Grosjean, P., & Artigas, L. F. (23 October 2018). "Combination of 'machine learning' methodologies and imaging- in-flow system to detect Harmful Algae semi-automatically". Poster session presented at 18th International Conference on Harmful Algae, Nantes, France.
  • Wacquet, G., Lefebvre, A., Blondel, C., Louchart, A., Grosjean, P., & Artigas, L. F. (23 October 2018). "Combination of 'machine learning' methodologies and imaging- in-flow system to detect Harmful Algae semi-automatically". Poster session presented at 18th International Conference on Harmful Algae, Nantes, France.

2017

  • Engels, G. (2017). "Etude du diméthylsulfoniopropionate et du diméthylsulfoxyde chez Posidonia oceanica (L.) Delile (1813) : cycle saisonnier naturel et bio marqueur de réponse au stress ocydatif induit par le cuivre. : Mémoire présenté en vue de l'obtention du grade de Master en Biologie des Organismes et Ecologie sous la direction des docteurs Richir Jonathan et Borges Alberto". Unpublished master thesis, Université de Mons. Jury: Richir, J. (Promotor), & Borges, A. (Promotor).
  • Engels, G. (2017). "Etude du diméthylsulfoniopropionate et du diméthylsulfoxyde chez Posidonia oceanica (L.) Delile (1813) : cycle saisonnier naturel et bio marqueur de réponse au stress ocydatif induit par le cuivre. : Mémoire présenté en vue de l'obtention du grade de Master en Biologie des Organismes et Ecologie sous la direction des docteurs Richir Jonathan et Borges Alberto". Unpublished master thesis, Université de Mons. Jury: Richir, J. (Promotor), & Borges, A. (Promotor).

2016

  • Brihaye, T., Boulanger, N., Grosjean, P., & Mens, T. (2016). COMPLEXYS - Research Institute for Complex Systems: Multidisciplinarity serving society. "Belgian Research in Belgium".
  • Brihaye, T., Boulanger, N., Grosjean, P., & Mens, T. (2016). COMPLEXYS - Research Institute for Complex Systems: Multidisciplinarity serving society. "Belgian Research in Belgium".
  • Abadie, A., Richir, J., Pieraccini, R., Velimirov, B., Leduc, M., Lepoint, G., & Gobert, S. (18 October 2016). "Investigating the potential of Cymodocea nodosa (Ucria) Ascherson as a coastal carbon sink coupling marine habitat cartographies and in situ nondestructive sampling". Poster session presented at International Seagrass Biology Workshop 12, Nant Gwrtheyrn, United Kingdom.
  • Abadie, A., Richir, J., Pieraccini, R., Velimirov, B., Leduc, M., Lepoint, G., & Gobert, S. (18 October 2016). "Investigating the potential of Cymodocea nodosa (Ucria) Ascherson as a coastal carbon sink coupling marine habitat cartographies and in situ nondestructive sampling". Poster session presented at International Seagrass Biology Workshop 12, Nant Gwrtheyrn, United Kingdom.
  • Koenker, R., Pin Tian, N., Zeileis, A., Grosjean, P., & Ripley, B. D. (2016). "Package 'quantreg'".
  • Koenker, R., Pin Tian, N., Zeileis, A., Grosjean, P., & Ripley, B. D. (2016). "Package 'quantreg'".

2015

  • Leblud, J., Moulin, L., Batigny, A., Dubois, P., & Grosjean, P. (10 March 2015). "Ecophysiological changes of a simplified coral reef community facing ocean acidification: a one year study in artificial reef mesocosms". Poster session presented at 8ème édition de la Matinée des Chercheurs 2015 (MdC2015), Mons, Belgium.
  • Leblud, J., Moulin, L., Batigny, A., Dubois, P., & Grosjean, P. (10 March 2015). "Ecophysiological changes of a simplified coral reef community facing ocean acidification: a one year study in artificial reef mesocosms". Poster session presented at 8ème édition de la Matinée des Chercheurs 2015 (MdC2015), Mons, Belgium.
  • Richir, J., & Gobert, S. (07 November 2015). "The trace element contamination of coastal waters: A holistic approach to environmental monitoring surveys". Poster session presented at 4th Annual International Congress of Ocean (WCO), Qingdao, China.
  • Richir, J., & Gobert, S. (07 November 2015). "The trace element contamination of coastal waters: A holistic approach to environmental monitoring surveys". Poster session presented at 4th Annual International Congress of Ocean (WCO), Qingdao, China.
  • Richir, J., Abadie, A., Binard, M., Biondo, R., Boissery, P., Borges, A., Cimiterra, N., Collignon, A., Champenois, W., Donnay, A., Fréjefond, C., Goffart, A., Hecq, J.-H., Lejeune, P., Lepoint, G., Michel, L., Pelaprat, C., Pere, A., Sirjacobs, D., & Gobert, S. (08 November 2015). "STAtion of Reference and rEsearch on Change of local and global Anthropogenic Pressures on Mediterranean Ecosystems Drifts: The STARECAPMED project". Poster session presented at 5th Annual World Congress of Aquaculture and Fisheries, Qingdao, China.
  • Richir, J., Abadie, A., Binard, M., Biondo, R., Boissery, P., Borges, A., Cimiterra, N., Collignon, A., Champenois, W., Donnay, A., Fréjefond, C., Goffart, A., Hecq, J.-H., Lejeune, P., Lepoint, G., Michel, L., Pelaprat, C., Pere, A., Sirjacobs, D., & Gobert, S. (08 November 2015). "STAtion of Reference and rEsearch on Change of local and global Anthropogenic Pressures on Mediterranean Ecosystems Drifts: The STARECAPMED project". Poster session presented at 5th Annual World Congress of Aquaculture and Fisheries, Qingdao, China.
  • Richir, J., Lejeune, P., Lepoint, G., Das, K., & Gobert, S. (07 November 2015). "The spatial variability of trace element bioaccumulation processes: Tools to environmental management". Poster session presented at 5th Annual World Congress of Marine Biotechnology (WCMB), Qingdao, China.
  • Richir, J., Lejeune, P., Lepoint, G., Das, K., & Gobert, S. (07 November 2015). "The spatial variability of trace element bioaccumulation processes: Tools to environmental management". Poster session presented at 5th Annual World Congress of Marine Biotechnology (WCMB), Qingdao, China.
  • Richir, J., Lepoint, G., Donnay, A., Lejeune, P., Gonzales, J.-L., Bouchoucha, M., Chiffoleau, J.-F., Andral, B., & Gobert, S. (29 September 2015). "Trace metal speciation? An essential aspect of biomonitoring to avoid wrong conclusions". Poster session presented at DGT Conference 2015, Donostia-San-Sebastian, Spain.
  • Richir, J., Lepoint, G., Donnay, A., Lejeune, P., Gonzales, J.-L., Bouchoucha, M., Chiffoleau, J.-F., Andral, B., & Gobert, S. (29 September 2015). "Trace metal speciation? An essential aspect of biomonitoring to avoid wrong conclusions". Poster session presented at DGT Conference 2015, Donostia-San-Sebastian, Spain.
  • Grosjean, P., Denis, K., Wacquet, G., Irigoien, X., Boyra, G., Arregi, I., Lopez-Urrutia, A., Sieracki, M. E., & Tupper, B. (2015). "Zoo/PhytoImage version 5.4-0 : Analyse d'images de plancton assistée par ordinateur".
  • Grosjean, P., Denis, K., Wacquet, G., Irigoien, X., Boyra, G., Arregi, I., Lopez-Urrutia, A., Sieracki, M. E., & Tupper, B. (2015). "Zoo/PhytoImage version 5.4-0 : Analyse d'images de plancton assistée par ordinateur".
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement juin 2015".
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement juin 2015".
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement mars 2015".
  • Wacquet, G., & Grosjean, P. (2015). "Projet FlowCAM/ZooPhytoImage : Rapport d'avancement mars 2015".
  • Wacquet, G., Grosjean, P., Colas, F., Hamad, D., & Artigas, L. F. (2015). "Version évolutive de l'outil opérationnel de numérisation et d'analyse semi-automatique d'images de phytoplancton, utilisant le matériel FlowCAM et le logiciel ZooPhytoImage. Nouvelles perspectives".
  • Wacquet, G., Grosjean, P., Colas, F., Hamad, D., & Artigas, L. F. (2015). "Version évolutive de l'outil opérationnel de numérisation et d'analyse semi-automatique d'images de phytoplancton, utilisant le matériel FlowCAM et le logiciel ZooPhytoImage. Nouvelles perspectives".

2014

  • Sheridan, C., Kushmaro, A., Baele, J.-M., Grosjean, P., Raymundo, L. J., & Eeckhaut, I. (24 August 2014). "Sedimentation influences on coral microbial communities". Poster session presented at ISME 15, Séoul, South Korea.
  • Sheridan, C., Kushmaro, A., Baele, J.-M., Grosjean, P., Raymundo, L. J., & Eeckhaut, I. (24 August 2014). "Sedimentation influences on coral microbial communities". Poster session presented at ISME 15, Séoul, South Korea.
  • Denis, K. (2014). "Improvement and use of supervised classification applied to plankton digital images in Zoo/PhytoImage: (real-time) study of plankton communities in the North Sea". Unpublished doctoral thesis, Université de Mons. Jury: Grosjean, P. (Promotor), Eeckhaut, I., Artigas, L. F., Lancelot, C., Flammang, P., & Wattiez, R.
  • Denis, K. (2014). "Improvement and use of supervised classification applied to plankton digital images in Zoo/PhytoImage: (real-time) study of plankton communities in the North Sea". Unpublished doctoral thesis, Université de Mons. Jury: Grosjean, P. (Promotor), Eeckhaut, I., Artigas, L. F., Lancelot, C., Flammang, P., & Wattiez, R.
  • Moulin, L. (2014). "Impact de l'acidification des océans sur l'oursin Echinometra mathaei et son activité bioérosive des récifs coralliens : étude en mésocosmes artificiels". Unpublished doctoral thesis, Université de Mons. Jury: Dubois, P. (Promotor), Grosjean, P. (Promotor), Chou, L., Flammang, P., De Ridder, C., & Gazeau, F.
  • Moulin, L. (2014). "Impact de l'acidification des océans sur l'oursin Echinometra mathaei et son activité bioérosive des récifs coralliens : étude en mésocosmes artificiels". Unpublished doctoral thesis, Université de Mons. Jury: Dubois, P. (Promotor), Grosjean, P. (Promotor), Chou, L., Flammang, P., De Ridder, C., & Gazeau, F.
  • Faria, J. C., Grosjean, P., Jelihovschi, E. G., & Pietrobon, R. (2014). "Tinn-R Editor (2nd ed.)". Editus.
  • Faria, J. C., Grosjean, P., Jelihovschi, E. G., & Pietrobon, R. (2014). "Tinn-R Editor (2nd ed.)". Editus.
  • Grosjean, P., & Denis, K. (2014). Supervised classification of images, applied to plankton samples using R and Zooimage. In "Data mining applications with R" (pp. 331-366). Elsevier.
  • Grosjean, P., & Denis, K. (2014). Supervised classification of images, applied to plankton samples using R and Zooimage. In "Data mining applications with R" (pp. 331-366). Elsevier.
  • Mens, T., Claes, M., Grosjean, P., & Serebrenik, A. (2014). Studying Evolving Software Ecosystems based on Ecological Models. In T. Mens, A. Serebrenik, A. Cleve, T. Mens (Ed.), A. Serebrenik (Ed.), & A. Cleve (Ed.), "Evolving Software Systems" (pp. 297-326). Springer.
  • Mens, T., Claes, M., Grosjean, P., & Serebrenik, A. (2014). Studying Evolving Software Ecosystems based on Ecological Models. In T. Mens, A. Serebrenik, A. Cleve, T. Mens (Ed.), A. Serebrenik (Ed.), & A. Cleve (Ed.), "Evolving Software Systems" (pp. 297-326). Springer.

2013

  • Grosjean, P., Leblud, J., & Batigny, A. (24 January 2013). "Methods and apparatus for analysis of aquatic chemical and/or biological systems".
  • Ali, N., Grosjean, P., Hamad, D., & Artigas, L. F. (31 March 2013). "Optimisation de l'application de l'analyse d'image, combinée à la cytométrie en flux, pour l'étude et le suivi de communautés phytoplanctoniques des eaux côtières". Poster session presented at 7ième Matinée des Chercheurs, Mons, Belgium.
  • Laghdass, M., Leblud, J., Moulin, L., Gillan, D., Grosjean, P., & Wattiez, R. (31 March 2013). "Effect of ocean acidification on coral-associated bacterial communities in artificial mesocosms by metaproteogenomic approach". Poster session presented at 7ième Matinée des Chercheurs, Mons, Belgium.

2012

2011

  • Lancelot, C., Rousseau, V., Lacroix, G., Denis, K., Gypens, N., Grosjean, P., Van Nieuwenhove, K., Parent, J.-Y., Ruddick, K., & Delbare, D. (2011). "Combined effects of changing hydroclimate and human activity on coastal ecosystem health - AMORE III". Belgian Science Policy.

2010

  • Faria, J. C., Grosjean, P., Jelihovschi, E. G., & Pietrobon, R. (2010). "Tinn-R Editor". Rmetrics Association.

2009

  • Gorsky, G., Picheral, M., & Grosjean, P. (30 June 2009). "Optical scanning device for liquid biological samples, process of operation and computer program for a computer connected to said device".

2007

  • Benfield, M. C., Grosjean, P., Culverhouse, P., Irigoien, X., Sieracki, M. E., Lopez-Urrutia, A., Dam, H. G., Hu, Q., Davis, C. S., Hansen, A., Pilskaln, C. H., Riseman, E., Schultz, H., Utgoff, P. E., & Gorsky, G. (01 January 2007). RAPID : Research on Automated Plankton Identification. "Journal of Oceanography, 20" (2), 172-187.
  • Kell, L. T., Mosqueria, I., Grosjean, P., Fromentin, J.-M., Garcia, D., Hillary, R., Jardim, E., Mardle, S., Pastoors, M., Poos, J. J., Scott, F., & Scott, R. D. (02 January 2007). FLR: an open-source framework for the evaluation and development of management strategies. "ICES Journal of Marine Science, 64" (4), 640-646. doi:10.1093/icesjms/fsm012
  • Lancelot, C., Rousseau, V., Lacroix, G., Denis, K., Gypens, N., Grosjean, P., Van Nieuwenhove, K., Parent, J.-Y., Ruddick, K., & Delbare, D. (2007). "Combined effects of changing hydroclimate and human activity on coastal ecosystem health - AMORE III: Final report phase I - Summary". Belgian Science Policy.

2006

2005

  • Vaïtilingon, D., Jangoux, M., & Grosjean, P. (2005). Cultured aquatic animal species: The european edible echinoid Paracentrotus lividus. In "Aquaculture Compendium". Wallingford, United Kingdom: CAB International.
  • Vaïtilingon, D., Jangoux, M., & Grosjean, P. (2005). Cultured aquatic animal species: The european edible echinoid Paracentrotus lividus. In "Aquaculture Compendium". Wallingford, United Kingdom: CAB International.

2004

  • Grosjean, P. (2004). "Getting started with SciViews, R and R Commander".
  • Grosjean, P. (2004). "Getting started with SciViews, R and R Commander".

2003

2001

  • Grosjean, P. (2001). "Growth model of the reared sea urchin Paracentrotus lividus (Lamarck, 1816)". Unpublished doctoral thesis, Université de Mons. Jury: Jangoux, M. (Promotor), Josens, G., Dubois, P., Lancelot, C., Deneubourg, J. L., & Russell, M.
  • Grosjean, P. (2001). "Growth model of the reared sea urchin Paracentrotus lividus (Lamarck, 1816)". Unpublished doctoral thesis, Université de Mons. Jury: Jangoux, M. (Promotor), Josens, G., Dubois, P., Lancelot, C., Deneubourg, J. L., & Russell, M.
  • Spirlet, C., Grosjean, P., & Jangoux, M. (01 January 2001). Cultivation of Paracentrotus lividus (Echinodermata: Echinoidea) fed extruded feeds: digestion efficiency, somatic production and gonadal growth. "Aquaculture Nutrition, 7", 91-99.
  • Spirlet, C., Grosjean, P., & Jangoux, M. (01 January 2001). Cultivation of Paracentrotus lividus (Echinodermata: Echinoidea) fed extruded feeds: digestion efficiency, somatic production and gonadal growth. "Aquaculture Nutrition, 7", 91-99.
  • Vaitilingon, D., Morgan, R., Grosjean, P., Gosselin, P., & Jangoux, M. (28 April 2001). Effects of delayed metamorphosis and food rations on the perimetamorphic events in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). "Journal of Experimental Marine Biology and Ecology, 262", 41-60.
  • Vaitilingon, D., Morgan, R., Grosjean, P., Gosselin, P., & Jangoux, M. (28 April 2001). Effects of delayed metamorphosis and food rations on the perimetamorphic events in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). "Journal of Experimental Marine Biology and Ecology, 262", 41-60.

2000

1998

1997

  • Duchamps, R., Grosjean, P., & Van Osselaer, C. (01 January 1997). Quelques anormalités dans le genre Nautilus. "Arion, 22" (4), 133-135.
  • Duchamps, R., Grosjean, P., & Van Osselaer, C. (01 January 1997). Quelques anormalités dans le genre Nautilus. "Arion, 22" (4), 133-135.

1996

  • Grosjean, P., Spirlet, C., & Jangoux, M. (01 January 1996). Experimental study of growth in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). "Journal of Experimental Marine Biology and Ecology, 201", 173-184.

1995

  • Grosjean, P., Spirlet, C., & Jangoux, M. (11 April 1995). "Establishment and presumed causes of the trimodal distribution commonly observed in cultivated populations of juvenile Paracentrotus lividus". Poster session presented at 4th European Echinoderms Colloquium, London, United Kingdom.